Alright sorry I missed the follow up on this - I was waiting for the photos.
Main Power Wiring. Unless you've switched your hot and neutral at your disconnect or main power breaker, then your Red and White are BACKWARDS - which is probably causing your pump problem - you're sending 230v to a 115v pump, and on the verge of frying the blower.
You need to verify 100% that you were supposed to tie the White (Neutral) and Black (L1) to the left side of the heater contactor. It SHOULD be Red and Black on the contactor input, with the white tied to your neutral (which should be white).
If you HAVE swapped the red and neutral at the disconnect or main power box, then you need to fix that as it can lead to a very unsafe condition in troubleshooting procedure or future repairs.
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The rest of this assumes the wiring is correct.
1. It would be a good idea to some things in the box, or replace the box.
A. Jets - That's a single pole air switch on the lower left, so that should not be responsible for both the jet light on top and the high speed pump activation... but if it is, then the switch may be applying power to the high speed pump motor, and the jets light - which would mean your pump motor or wiring has an intermittent fault. To confirm if the switch is supplying power to the light AND the pump, follow the yellow wire in the lower right hand back side of the box.
It probably connects to a relay that is not visible in the photos. If so, then replace that relay.
B. High Limit Switch - Replace, it's old corroded and looks like hell.
http://spapartsnet.com/Electric-Heaters ... 2_0_1.html
2. Leave the control box thermostat turned down (ccw). You use the one on the top of the tub to control temp.
3. Unless that controller can shut the heater down when the pump or blower is running, then your main power wiring is too small. The max load capable on those incoming power wires is 30 amps. That box is designed to work around 40 amps. In the interim, do not use the blower or jets on high speed if the heater is on. You'll definitely overheat your main power cabling and it could cause a fire under adverse circumstances.
That said, if what I'm assuming about this is correct and if you have a breaker feeding this thing that is larger than 30 amps, you'll also need to replace that too. It's either that or...
1. Rewire with 8 gauge (or 6 depending upon distance run).
or
2. Replace with digital system that has the capability to work in low current mode
http://spapartsnet.com/Spa-Packs-Contro ... 8_3_1.html
or
http://spapartsnet.com/Spa-Packs-Contro ... 8_2_1.html